GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| BRCA | cis | rs11190604 | 1 | rs11190555 | chr10:102209160 | SEC31B | chr10:102246403-102289636:- | -0.28 | -10.32 | 7.37E-24 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190556 | chr10:102209223 | SEC31B | chr10:102246403-102289636:- | -0.28 | -10.32 | 7.37E-24 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190557 | chr10:102209369 | SEC31B | chr10:102246403-102289636:- | -0.28 | -10.32 | 7.37E-24 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190558 | chr10:102209397 | SEC31B | chr10:102246403-102289636:- | -0.28 | -10.32 | 7.37E-24 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190569 | chr10:102227409 | SEC31B | chr10:102246403-102289636:- | -0.28 | -10.58 | 6.06E-25 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190570 | chr10:102227702 | SEC31B | chr10:102246403-102289636:- | -0.28 | -10.47 | 1.71E-24 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190572 | chr10:102232879 | SEC31B | chr10:102246403-102289636:- | -0.28 | -10.5 | 1.3E-24 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190578 | chr10:102238953 | SEC31B | chr10:102246403-102289636:- | -0.28 | -10.23 | 1.76E-23 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190587 | chr10:102266638 | SEC31B | chr10:102246403-102289636:- | -0.3 | -10.58 | 6.02E-25 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190589 | chr10:102275471 | SEC31B | chr10:102246403-102289636:- | -0.3 | -11.13 | 2.69E-27 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190592 | chr10:102291059 | SEC31B | chr10:102246403-102289636:- | -0.3 | -11.09 | 3.91E-27 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190595 | chr10:102291761 | SEC31B | chr10:102246403-102289636:- | -0.3 | -11.09 | 3.91E-27 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190597 | chr10:102293676 | SEC31B | chr10:102246403-102289636:- | -0.3 | -11.16 | 1.98E-27 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190599 | chr10:102295420 | SEC31B | chr10:102246403-102289636:- | -0.3 | -11.18 | 1.69E-27 | Palmitoleic acid (16:1n-7) plasma levels |
| BRCA | cis | rs11190604 | 1 | rs11190601 | chr10:102296730 | SEC31B | chr10:102246403-102289636:- | -0.3 | -11.24 | 8.88E-28 | Palmitoleic acid (16:1n-7) plasma levels |